Namespace fwdpp

The primary namespace defined by this library.

Namespaces

• Namespace fwdpp::data_matrix_details

• Namespace fwdpp::debug

• Namespace fwdpp::detail

• Namespace fwdpp::enum_bitflags

• Namespace fwdpp::extensions

• Namespace fwdpp::fwdpp_internal

• Namespace fwdpp::gsl

• Namespace fwdpp::internal

• Namespace fwdpp::io

• Namespace fwdpp::meta

• Namespace fwdpp::poptypes

• Namespace fwdpp::strong_types

• Namespace fwdpp::sugar

• Namespace fwdpp::tags

• Namespace fwdpp::traits

• Namespace fwdpp::ts

• Namespace fwdpp::util

• Namespace fwdpp::validators

Classes

• Struct additive_diploid

• Template Struct binomial_interval_t

• Template Struct binomial_point_t

• Struct data_matrix

• Struct emplace_back

• Struct equal_eps

• Template Struct fixed_number_crossovers_t

• Struct genetic_map_unit

• Template Struct genetic_parameters

• Struct genetic_value_is_fitness

• Struct genetic_value_is_trait

• Template Struct haploid_genome_base

• Struct haplotype_dependent_trait_value

• Struct mendel

• Struct multiplicative_diploid

• Struct mutation

• Struct mutation_base

• Struct no_selection

• Template Struct poisson_interval_t

• Template Struct poisson_point_t

• Struct remove_neutral

• Struct remove_nothing

• Struct site_dependent_genetic_value

• Struct state_matrix

• Template Struct wrapped_range

• Class genetic_map

• Template Class GSLrng_t

• Template Class nested_forward_lists

• Class nested_forward_lists_overflow

Functions

• Template Function fwdpp::add_mutation

• Template Function fwdpp::add_mutations

• Function fwdpp::assign_is_fitness_value(const trait&)

• Function fwdpp::assign_is_fitness_value(const fitness&)

• Function fwdpp::assign_is_trait_value(const fitness&)

• Function fwdpp::assign_is_trait_value(const trait&)

• Template Function fwdpp::begin(wrapped_range<T>&)

• Template Function fwdpp::begin(const wrapped_range<T>&)

• Template Function fwdpp::change_neutral

• Function fwdpp::col_sums

• Template Function fwdpp::compact_mutations

• Template Function fwdpp::dispatch_recombination_policy(const recombination_policy&, DiploidType&&, haploid_genome_t&&, haploid_genome_t&&, MutationContainerType&&)

• Template Function fwdpp::dispatch_recombination_policy(const recombination_policy&, DiploidType&&, haploid_genome_t&&, haploid_genome_t&&, MutationContainerType&&)

• Template Function fwdpp::dispatch_recombination_policy(const recombination_policy&, DiploidType&&, haploid_genome_t&&, haploid_genome_t&&, MutationContainerType&&)

• Function fwdpp::empty_haploid_genome_queue

• Function fwdpp::empty_mutation_queue

• Template Function fwdpp::end(wrapped_range<T>&)

• Template Function fwdpp::end(const wrapped_range<T>&)

• Template Function fwdpp::filter_keys

• Template Function fwdpp::generate_breakpoints

• Template Function fwdpp::generate_new_mutations

• Template Function fwdpp::genotype_matrix

• Template Function fwdpp::haplotype_matrix

• Template Function fwdpp::infsites_mutation

• Template Function fwdpp::infsites_popgenmut

• Template Function fwdpp::make_genetic_parameters(GeneticValueType&&, MutationFunctionType&&, RecombinationFunctionType&&, SwappingFunctionType&&)

• Template Function fwdpp::make_genetic_parameters(GeneticValueType&&, MutationFunctionType&&, RecombinationFunctionType&&)

• Template Function fwdpp::make_haploid_genome_queue

• Template Function fwdpp::make_mut_queue

• Template Function fwdpp::make_wrapped_range

• Template Function fwdpp::mutate_recombine

• Template Function fwdpp::mutate_recombine_update

• Template Function fwdpp::mutation_keys

• Template Function fwdpp::rbegin

• Template Function fwdpp::recbinder

• Template Function fwdpp::recycle_haploid_genome

• Template Function fwdpp::recycle_mutation_helper

• Template Function fwdpp::rend

• Function fwdpp::row_sums

• Template Function fwdpp::sample_diploid(const gsl_rng *, haploid_genome_cont_type<haploid_genome_type, haploid_genome_cont_type_allocator>&, diploid_vector_type<diploid_geno_t, diploid_vector_type_allocator>&, mutation_cont_type<mutation_type, mutation_cont_type_allocator>&, std::vector<uint_t>&, const uint_t&, const uint_t&, const double&, const mutation_model&, const recombination_policy&, const diploid_fitness_function&, typename haploid_genome_type::mutation_container&, typename haploid_genome_type::mutation_container&, const double, const mutation_removal_policy)

• Template Function fwdpp::sample_diploid(const gsl_rng *, haploid_genome_cont_type<haploid_genome_type, haploid_genome_cont_type_allocator>&, diploid_vector_type<diploid_geno_t, diploid_vector_type_allocator>&, mutation_cont_type<mutation_type, mutation_cont_type_allocator>&, std::vector<uint_t>&, const uint_t&, const double&, const mutation_model&, const recombination_policy&, const diploid_fitness_function&, typename haploid_genome_type::mutation_container&, typename haploid_genome_type::mutation_container&, const double, const mutation_removal_policy)

• Template Function fwdpp::sample_individuals

• Template Function fwdpp::sort_keys

• Template Function fwdpp::update_mutations(MutationContainerType&, mutation_lookup_table&, std::vector<uint_t>&, const unsigned)

• Template Function fwdpp::update_mutations(const MutationContainerType&, mutation_lookup_table&, std::vector<uint_t>&)

• Template Function fwdpp::update_mutations(MutationContainerType&, fixation_container_t&, fixation_time_container_t&, mutation_lookup_table&, std::vector<uint_t>&, const unsigned&, const unsigned&)

• Template Function fwdpp::update_mutations_n

• Template Function fwdpp::zero_out_haploid_genomes

Typedefs

• Typedef fwdpp::binomial_interval

• Typedef fwdpp::binomial_point

• Typedef fwdpp::diploid_population

• Typedef fwdpp::fitness

• Typedef fwdpp::fixed_number_crossovers

• Typedef fwdpp::flagged_haploid_genome_queue

• Typedef fwdpp::flagged_mutation_queue

• Typedef fwdpp::gsl_ran_discrete_t_ptr

• Typedef fwdpp::GSL_RNG_MT19937

• Typedef fwdpp::GSL_RNG_TAUS2

• Typedef fwdpp::GSLrng_mt

• Typedef fwdpp::haploid_genome

• Typedef fwdpp::haplotype_dependent_fitness

• Typedef fwdpp::instead

• Typedef fwdpp::poisson_interval

• Typedef fwdpp::poisson_point

• Typedef fwdpp::site_dependent_fitness

• Typedef fwdpp::trait

• Typedef fwdpp::uint_t